NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10002191

Scaffold Ga0075470_10002191


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10002191 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6081
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003687Metagenome / Metatranscriptome473Y
F007026Metagenome359Y
F021097Metagenome220Y
F035274Metagenome172Y
F059883Metagenome133N
F091979Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0075470_1000219110F035274N/AMALTISKEELDSALAVFKIDDYYLQVDDDNVIYLHWVSTTSQAREYIDAFLECLDVLIDECWVDTYGSHEQGTPIQLPDEDYICCRYILATI*
Ga0075470_1000219111F003687GGAGMTPKAVEQLLTQDARLLARRDSPAIDQELETQRQAALELFFQWQDGLAQFQDLVPFCIVLQRKVDLNRELLRWERRHED*
Ga0075470_1000219112F021097N/AMSDFTQACVSLVLGIGSGVLLSVGAQKMLNSYYRDTCNSRPNHNLIYTQSALGDTYYCIHSKYL*
Ga0075470_100021912F007026N/AMEQTKKYPEYSWTKNEYHQLQLVVDALKAICAREDKRHMMDEHLDPHMRNIIDEVIGMLEDEIDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHR*
Ga0075470_100021913F091979AGGMLIAGRYLVGGSPFLEGWKQEYMKAQGSMPPPNKVMDFLVSVVRNESIPMQDKQAEIRMLDQMQRFGGMGSDR*
Ga0075470_100021916F059883N/AMTEDNKRYHLIINVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLSFQEDGPSFVDNLATKIANTF*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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