Scaffold Ga0075470_10001560

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10001560
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7157
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (36.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F004898	Metagenome / Metatranscriptome	419	Y
F027765	Metagenome / Metatranscriptome	193	Y
F041726	Metagenome / Metatranscriptome	159	Y
F048268	Metagenome / Metatranscriptome	148	Y
F082390	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000156012	F000744	GGA	MKEVNVNLNVHEIGVILSALQELNLREENRIAREYGSVPALYAKLHDFWEQMDTSETGLRNDVVPSF*
Ga0075470_1000156013	F082390	GGA	MFTVNLTEQQLALMEKIVGEKFDEVAQAWLPAEETKAMNNLCYSTMLNLRCVRLAKEYDETYAKWDSEFYSFDKEQYLKDVGLVTDEQLAQQGVC*
Ga0075470_1000156016	F027765	N/A	MNDEDIRQFMNAFEDFTKHAEVEEFNHSAWTSARQYTDHFYEQKAAELEVTVDYMMAEFMID*
Ga0075470_100015604	F004898	GAGG	MDLSELIEELREIEIYGSEPSDWMGYLGSDDYWVPDEELAY*
Ga0075470_100015607	F041726	AGG	MKTYRMLIEYWVPDEDENIFEEKIIQSRSSCGKIADDYLAQDRTNLIRSVEVTPV*
Ga0075470_100015608	F048268	N/A	MQLSTQSVSKIADALKPSVIDYIYEDEGFVEYMQTAIVDGIRETMGNMDDDLLFELGMLIFDRIELK*