Scaffold Ga0075470

Basic Information
Taxon OID	3300006030 Open in IMG/M
Scaffold ID	Ga0075470_10000659 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11012
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (50.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11012

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (50.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F009134	Metagenome	322	Y
F038648	Metagenome / Metatranscriptome	165	N
F086598	Metagenome / Metatranscriptome	110	N
F097203	Metagenome	104	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000065912	F103133	N/A	MRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRKAALAAREEFSELSEFLETLRIVPAETPETENIYA*
Ga0075470_1000065917	F097203	N/A	MNYPEQIPTAYAADSALERAYRLGWNHGHGIACHNVPSIGDSIDRSIDWVGLGKTVTAENITEYHECLCFAAESGSREYSPFEFTAHEFNESDDANELWEAFESGVSDSIRFDLKGYSYAELV*
Ga0075470_1000065919	F009134	AGGA	MQTVCKENKSLKTENSIEALSILVRSKLAEDAASTIERVNGYSLDGIRDESTREQILGSVAKRSALVFGWSETGEQASVSINLLGSMPDRISEIQVTNESDLK*
Ga0075470_100006592	F086598	N/A	METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALQRSSHQDDDDSDCEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEERLGRKIFNLPLATT*
Ga0075470_1000065923	F038648	N/A	MPVFTIPKGVEIPENLKEGEAFQTMATIVLGKGGKAEVIEIDGVAIPGYEKQSKGKKMAEQGGEDDGEMESENEAEVSGPPGFIAEVMRRGAGPMR*
Ga0075470_100006595	F001964	AGGAGG	MSRNLFAPPKFKVQINGSLGWADLKEKVVMYKTLEYPTRKEAEATARELNPGEYTQGRIRVVPVEMPEDYDVYPTPERTKP*
Ga0075470_100006598	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGETEEHGATPMSIYDEEKHICSIVAANGEQILELIIEREPGDRICPAFEGNPDEEKLP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075470_10000659

Overview

Ecosystem & Geography

Associated Families

Sequences