NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10000537

Scaffold Ga0075470_10000537


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10000537 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12236
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F003377Metagenome / Metatranscriptome490Y
F012767Metagenome277Y
F039989Metagenome162Y
F066715Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0075470_1000053712F003377GAGGMTDAAKETMYGIIERWGFPTLVAIACGWVLRQDVLLPLVEEHRTFVKSLSETQREISKAVSEQTRLLYALQPRAGESQEN*
Ga0075470_1000053714F039989GAGGVRYLLCLLIAVIGCVATLPDDHGVSADMACETARMVTQLRQEIAPTPASDKCDNCDGTGKIGDGRIVLECPACKGTGKK*
Ga0075470_1000053717F002540AGGAGGVPNYEATPAELEKYGGNLSIWDQIRLLQTWAPLVGFAQRFAQTADPYAKAVIVSEAAEWVASKTDAKVDDQLVRLLGDLLKTKEGEALVRWCLLQVEAAR*
Ga0075470_1000053719F012767N/AVRGNTATISLTAFRADWATHMPMRALCERWTISRDQVIRLAVVWELPRRHDRKLRAKPVRQRDPTTTEIQQACIQIQATWSDDVREDRRVTKTQLVSLKRIPLDSETREHTAYDGDADLWEANR*
Ga0075470_100005379F066715AGGAGMADNILSRKNRDIDITLATATASATTLDMRDVAGAVVSFGTMSTNASALQMWVGTSTAGTFRRLYKSDGSVADLTLSASSTDGRAYALPDEVFGTEFLKIVSATTNSTGTVGVVMLKS*
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Institute for Fundamental Biomedical Research
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