Scaffold Ga0075470_10000393

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000393
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14488
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (67.35%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019061	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F043358	Metagenome / Metatranscriptome	156	Y
F047649	Metagenome / Metatranscriptome	149	N
F055721	Metagenome / Metatranscriptome	138	Y
F067687	Metagenome / Metatranscriptome	125	N
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000039321	F043358	GGA	MKVYDYRIVEDLNLKTLKPYFFIQRYNIKDQKYFLYSDATFQTLQEAQEAIRLLRKYNEPLYHYVE*
Ga0075470_1000039331	F019061	GGA	MTNEPTDTEILEFLLNQFKPHSLKMNGESDWVFINTGFPMNKAKGKSARDAVISAMEAK*
Ga0075470_1000039333	F047649	AGAAGG	MRYYETRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRELVKTQNISITPEFAKLIGLK*
Ga0075470_1000039337	F067687	N/A	MTNLSPQAQAIVDAFDAEYYQKARNRQDALAAVLRVLADNVAPDDYKCFYGDREYDAGMEGRNDEIREAILSIATELEAN*
Ga0075470_1000039338	F032252	GGAGG	MKLYRYKKDGCLYNLYEMLMPYYELKAVPYFPNQGILAKSKRSISMNDFEVVAER*
Ga0075470_100003938	F077968	GGAGG	MTDTWKKWNIYTSIHLFEYCVFSWRNLMWMHLDGFKDEDRMRELFWYYLNYGNINTYYE*
Ga0075470_100003939	F055721	GGA	MSKEEYYKWIEENDTYPEHSHQWIVKTYIDNQMFYRNFGPFETKKEAKEWIVNYKKKYTTKGFITRYSIQALCEVL*