Scaffold Ga0075470_10000281

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000281
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17032
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (75.00%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Associated Families: 17

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002489	Metagenome / Metatranscriptome	554	Y
F004666	Metagenome / Metatranscriptome	428	Y
F005177	Metagenome / Metatranscriptome	409	Y
F005745	Metagenome / Metatranscriptome	391	Y
F007363	Metagenome / Metatranscriptome	352	Y
F007470	Metagenome / Metatranscriptome	350	Y
F017484	Metagenome / Metatranscriptome	240	Y
F021111	Metagenome / Metatranscriptome	220	Y
F024549	Metagenome / Metatranscriptome	205	Y
F026195	Metagenome / Metatranscriptome	198	Y
F078406	Metagenome / Metatranscriptome	116	N
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000028110	F005745	AGGA	MNITATELDPRLHKLVNLGVSGIDIMHGELKIKMLEAEAELQMAQEIEEENDYSDAMESMERKYWEGYTDALAALYSLTYDLSFAIADKEAKNGN*
Ga0075470_1000028112	F000868	GGAG	MAESFLENENQMVIDAIYHEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNLFYDLNPEDQYYLEWDENV*
Ga0075470_1000028115	F000450	AGGA	MGDRANFGFVQPNGNTIVLYGHWAGHQMLGRLADAVIAARPRWNDTAYATRIAISQLIKDDWNSETGWGLHVNEIADNEHKIAIVDFNQQTFSLHEEDSFSNTSNKVRGMKNEALFTMDLSTFCEKYALEGILVN*
Ga0075470_1000028117	F007470	AGGAG	MDYQDGFEDGVKFAREVIINNIRLWAETSEDGQAYDDIADRLEFGTVDYDL*
Ga0075470_1000028118	F000311	GAG	MYFELTAPDRLSLEMAYWEAQISGLDPEFMPPLTFNVGTGSIEKVSRIRDKFNLVESYTADAQPTGYIRR*
Ga0075470_100002812	F026195	N/A	MGFLDNLEAWLDFEEDIDKDPEMGHSNPEIGYSTGKWSDEDDRHPVITPVFGPNR*
Ga0075470_1000028122	F005177	AGGA	MKNRYRVEIFDEIKDNDLTLYSDEGVNKEYLTELVFSNLRRFSGNVRAYVFDNLKKKKTTALYLPMEVIPKKTELTKLLG*
Ga0075470_1000028123	F024549	N/A	MLKYLSLLTERKQMYKLTVLYDGDVFATYQYSDALQAFEAFARCIDVGFAENEATYNLSMPTGKMYTKNFNRAGLVSAK*
Ga0075470_1000028125	F002071	AGGA	MATTLEIGQTFTTEKSGVIGVIKAVDNHPSGVARVLLDVNGSERWTSVSI*
Ga0075470_1000028127	F078406	AGGA	MLSTATALIEATEQSIFDEEVMGFAQAFCHNAKDLDTEQFAKSIYVYSCMLASLAVDKAMKVLLSEDEIIDLMNAIDELETMRDEVMNNGE*
Ga0075470_1000028138	F007363	GGAG	MKGKLTMKSYSIVDLLVDTYYAPTSLRRRFNGGIINHAEKREDIYLPEGYEAFAIRYRPTGRFNDEWATVAVRVADY*
Ga0075470_1000028139	F017484	AGGA	MGYLEIFEMNENGAGWVSLENASTSTKLDLELAMLTKAEVKMLCFVCHKEIAKGNVCVNHKNVRGAVYFE*
Ga0075470_100002814	F095357	AGGTGG	MAQSKEIKVGELLANSVEDYWFNPATLGHYLSQQPNWTIDRVMEVVCWIIEKNAGVYKDKAGKQEISEGLALAYTLDNLINRIKEANNFNHIKLP*
Ga0075470_100002815	F004666	AGGA	MTTKREYLASKGITVGRRGRFSSAAKQALQEAESQGIKFVAESKTPKK*
Ga0075470_1000028154	F002489	N/A	MTENEKSQNLEDNLDMVNYIMLHRIYDLLTIIANKLVGPEDTSKLIQYHEQGFLLGPTPAYTPSEDSSENS*
Ga0075470_1000028155	F021111	GGA	MNEWKKPSEISEIQTDGGQIKETDAMGREKFWEDLGRPND*
Ga0075470_100002817	F001019	AGGAGG	MSNYAPSLEILEVNYSVSPGGVDTFEVYDKSEIEPVQLPIYETESLTEAVQFCYNLGRDFIVRTYAEWEMRELLADI*