Scaffold Ga0075470

Basic Information
Taxon OID	3300006030 Open in IMG/M
Scaffold ID	Ga0075470_10000140 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25472
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (79.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

25472

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (79.31%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000014017	F000934	GAG	MSLNQILAISESVGINDQRFVGQVLSRNQRITTSEVLTVVPFQFTLRPMPYLLYSQNRDLLSSLRVPDKALTQYLNFGETGWQAYVDYMGDMTPAQIAGCAWQTASANKSLVLGDLPSIASTKYIVKNGDFMQVGLYSYIATADVLRGVGSTVTIPVHRNLLTPVTAPIDAVIGQYGTTVSMGGDSYTGITFPVVLKSYPTYTLIPMATDAYIQWAGDFVAYEVVL*
Ga0075470_1000014018	F002085	AGGTGG	MNVIAPVDGTNNIRYADFVRVTTPSAQYRFATTPMAITVPEVDIQPFDAVGQLVKVGEAQRDIKSTSNETTVSFVGIDTAMLGWVLGQEIKGSQIEMWHGFFNTDGQLITTGGTGGLYKFFTGYISSFSISEQWMEEVRAFAGLITVSASSIQMILQNRVAGRYTNDNSWQFFNPGDTSMNRVAFVSTINYRFGRQGSDAPPVDLSKIAETAARSFLR*
Ga0075470_1000014022	F001991	GGAGG	MAVFNKNTLYQVSGFDNPIIAGELVYQQKTYWNLTFTNSGAIPVDLTGATIDAQIVRRLLSNITDTRNGLTFDITDYVPAPTPVPLTITNRDDPTGSFTLVIDQDSWDIIAGDPELDISAQSPVGFSGRIKIGFPSFGGTPEDDAIIFLLFLVRSDGVVNTSAAV*
Ga0075470_100001409	F012668	N/A	MAIVRYENLDVNNVTNGTDAVGQYTTTITKWFSTRGLVHDVANSLRISERYRVYSDLVNITLNYTRNTKQMVDNQNLYSITWRGFDWRITDVRESNDRQKVTFLCYRNDPEVPV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075470_10000140

Overview

Ecosystem & Geography

Associated Families

Sequences