Scaffold Ga0075470_10000105

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000105
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29429
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (50.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F011216	Metagenome / Metatranscriptome	293	Y
F018171	Metagenome / Metatranscriptome	236	Y
F019637	Metagenome / Metatranscriptome	228	Y
F050368	Metagenome	145	N
F078616	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100001051	F019637	N/A	MPTQIQFLVDQYGLANVAWFIRLMKRGTPPEQLVSYCVPKEGDSRRDGVFRALQYASTLPDSMMPEEITKALKP*
Ga0075470_1000010517	F009398	N/A	MTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDANTPVAGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR*
Ga0075470_1000010518	F005024	GAGG	MTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSTIYNTAMQKAMDDELVELTSHMTEAMLANGKVLEENGIAIK*
Ga0075470_1000010519	F006107	GGA	MNAVALRAEKAVADYLAAADWSASGSGTPTCLTSYSRGLYDDPDLEDVMPNFPRLVVSTNSARPVQRVDLTNEVEVSVELQLSADDTDEASVLTTVQVLDNRILPLFDDAGASALDAATNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATT*
Ga0075470_1000010520	F018171	N/A	MANTQGSKYIFGSPATLALYDAAGALVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANTTSVANALLSAALPDVNGTCVITGAPVIEVGGYADAINAATGNRWIYAGGGSIKTTATGKATGTITLKRYTNITATGAATAL*
Ga0075470_1000010533	F050368	GGA	MINEEEVRRLPLWKDWIDRNEHRIAHGLTVTMEEMEEALDGIRETHSFNMEVHNIRRELRHRGMNFSQRGLRGAGFQILPPNTNADEMEHLNRVALNSLKASVILGTRTNLSLLSDCERKRHEAVTEKMAHRLALLGRSNAGLGQDIAKQITQ*
Ga0075470_1000010536	F078616	GGAGG	VNPIAAGVKAGWISFPVEVKARQMSRSLAQPAEAFDSGLAWRMYDNGASREQIARAVGCSRRGVQAIIEHGRNSR*
Ga0075470_100001054	F006262	N/A	MFTFTVAIKRSYLRAVYSTLGGVTLLAALAAKSVAASAVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLDDYDLAVYYLGQDGISSPTDTQIYNKMMAVVLVAATSYGGDFSNFRREGTIRTGMT*
Ga0075470_1000010545	F011216	AGGAGG	VSHLVNANKKVVSKTPRTDRQPYITAGFNQFVKIGFARQLERQLAGANEKIKRLELQIDELGDLVKWLEGR*
Ga0075470_100001057	F005633	AGG	MRIATTISVDKAGKSKIVAGPEVDAAAQRTDFNTAKIAEGSKLILWIQGSVAPKIRKG*
Ga0075470_100001058	F009147	AGCAG	MEYSMGRQGFFPVTTTAAQTGNFSAVIPTEPTVFTSITGTGISGTWTGITLPAGFPLCGDITGFQLASGKAVAFLARTA*