Scaffold Ga0075470

Basic Information
Taxon OID	3300006030 Open in IMG/M
Scaffold ID	Ga0075470_10000015 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65201
Total Scaffold Genes	105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	94 (89.52%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

65201

Total Scaffold Genes

105 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

94 (89.52%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F004788	Metagenome / Metatranscriptome	423	Y
F005450	Metagenome / Metatranscriptome	400	Y
F039984	Metagenome / Metatranscriptome	162	Y
F093791	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100000152	F005450	AGGAG	MDKKEVKAIADKEVKAHEKRMHAKGMKKGGVTSMDMKKYGRNMARAMNQRGSSRGG*
Ga0075470_1000001522	F093791	AGG	VSEQDKTLGVLDRILTYVDSPFKLIALLVMFVFGFCAWFVYSNQELLVGAYKESQKLPSINESRADDAAAILFKYGGAQTVAIFKVNPLFGTRVLYRAYTKEGRDKRMEGIDVGLFTQNPNNNADVVKLMAGETPCSDYAKPQSEVGLWYVEAGVTYGCRISVPPDATRFIGQITVGYKDRPESVEDAQSMLLIASSMLTKKSY*
Ga0075470_1000001528	F000843	N/A	MPLHQVLPIHLPKVWPIAAPLLQKAIDIDPEAITIEQVEYSVRTGKTFLLVWEELEVGITGAATVDFIDYPRERVAHVNLMGGKGIVRQHIFEHAKEWMKAYGATKAQCWCRDELVPMYKKMGMEETHHVMRIKL*
Ga0075470_100000153	F039984	GGAGG	MAKNDFAPVMKAEKYPLGHAKENKDASAYTGFKYPPGGGNDIGVYKQPMENMHKAAPDVVSKRGNGVNENNMSVGGVSKGNYGADNKHGEKTMRGYGAATKGIKTRGPMA*
Ga0075470_1000001589	F004788	AGG	MDALEVLTKQTDEKVAQIKDYLSEGKAESFEEYKRLCGEIRGLLTARGYILDLQQNLENADDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075470_10000015

Overview

Ecosystem & Geography

Associated Families

Sequences