Scaffold Ga0075466_1065381

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1065381
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1039
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F014130	Metagenome / Metatranscriptome	265	N
F053138	Metagenome / Metatranscriptome	141	N
F057991	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_10653811	F057991	N/A	ILDSIKDLKQYEYQVVINYNQYHYITNTMRSCGKDEPEAMKALKQKLSKKMDKLKDKRGQYKVESIKLI*
Ga0075466_10653812	F014130	N/A	MNAMDKRYTFELVLNLDDKYYTTNLMAGYGSTPDNAMDNLKAKLNNQFMMLKEDNYNFTIGSIKHITP*
Ga0075466_10653813	F001283	N/A	MTTQQAKEILNKPFICKEAERSIREMKIKLSKYTGDKSEQTKHLSNLDNLLNLAHKQAIDLDTYEDLLATYLFKIGEQQAKIRELVEMHAISEHIHEVGIDEVVKDFKSKIQLR*
Ga0075466_10653814	F053138	N/A	MIGLFEVSATKAGKTISCTMFGNIAEKEQLFGELMNQHKIEQSERHLWKLTNITTKYNSFANDAF*