Scaffold Ga0075466_1037938

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1037938
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1470
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F056143	Metagenome	138	N
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_10379382	F056143	GAG	MSKMSDWAIQLEEDFWDTANKVVGGCEYFGQFVQEMQPHRDWLGTHDDQEYCERLRDAWDNYWSDKQ*
Ga0075466_10379383	F100955	AGGAG	MIKKYTEEQIANAVTNCVESWDREKLIGYASLRLYVEFMDRSRPVGDIDDLITEFGDE*
Ga0075466_10379385	F016757	GGAG	VTERTWEVKVEATTTREVIVHANTEYEAQIQAQIEMAGLVGGENTKVLAVKETTDA*
Ga0075466_10379387	F003073	AGGAG	MAKKLENMTTDERIAYFEEEREKKRINRRNRIDKLDINQRAAVIKVSEVLGEVLETALYPDMGGIKAVTAYDLQELSDAMDALQFQFNLREE*