Scaffold Ga0075466_1010542

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1010542
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3165
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_10105423	F013088	GGAG	MDELIKKALWIPEELHKDIKIFAIQNNLTIEQASQMLIKLGMVSYVSEKNNDSV*
Ga0075466_10105424	F093807	GAG	MTQYSDIVETQRLKLNKEKDEWYIHVNNGAGYTEVKDGDTLTKTYHATGKQEITIDAN*
Ga0075466_10105426	F006845	GAG	MKSYKRQMDLSSYLLEEDFEQYCRMAFERIQTACDFLGIINDEDYQGFKERCYTQLETDYINSIDKTIH*
Ga0075466_10105427	F038657	AGGAG	MDILGGMSSSEEKPQIYFGFKTIGQQFFANGETPVEFKYLQLDIDTFKSGWGRYTKADGFEYKWDAKFGVVDPKPAEDWKRAFSCWVMPNGGHAMLWQRFTFAESSAFNKILGTFWHEKDANVGKLPVVEYKGSKPIQVGMGSSSELTFEFVKWGDRGFNVPEWYVDPNTPVDDDDGFVSPNAGLADLVNKAEEDNDDVPF*