Scaffold Ga0075466_1008821

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1008821
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3486
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007417	Metagenome	351	Y
F063662	Metagenome	129	N
F104980	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_10088213	F007417	AGGAG	MTRYTLEVKLPSLGWVVAIKTRDLFYMARKRARLIKQGHEVKLTKKRGK*
Ga0075466_10088214	F104980	AGGGGG	MERFAERFDDAFYIWEDHIEGIDKPVLWEYKNRDKCFYQYPMYKRSDYKILVQLTKEQRKIALDFLDALHAPLNEETRQHNNEKARLRRLK*
Ga0075466_10088216	F063662	AGGAG	MEVIFNILGGGEIRLPKREVRGYYKDFLTGETKVQVGENEHKVRESLTEIAYLMGVVK*