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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006029 Open in IMG/M |
| Scaffold ID | Ga0075466_1007439 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3814 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008925 | Metagenome | 326 | Y |
| F012581 | Metagenome | 279 | N |
| F029779 | Metagenome | 187 | Y |
| F055714 | Metagenome | 138 | N |
| F104989 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075466_100743910 | F029779 | AGGAG | MSDKEKYEELCEALAGIDATERYTHEDILSYVYNLKKIEEKFYDNKN* |
| Ga0075466_100743911 | F012581 | GGAG | MAKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDDE* |
| Ga0075466_100743913 | F104989 | AGGAG | VVNKMTTQEHWELHQGLWNTIGCDMQVYKQDSDRIIYIDKNSKWAYKYEHGVIERKLQTNPDRKYR* |
| Ga0075466_100743917 | F055714 | N/A | NGVKHMRKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCENSTDFDEIMENIHAVDGILEIHIHKEGEKSDWCNVILHNGDPDCEISDCTVDGYIDKWTERTDFGQKPWNDGFK* |
| Ga0075466_10074399 | F008925 | AGGAG | MTTKTKPKIDAVTLNLINKLKKIEDTINEGAWEYIHLGDIIRLQDASQEAISHFDLRKEGGVHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |