Scaffold Ga0075466_1006528

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1006528
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4103
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N
F070658	Metagenome	123	N
F075427	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_10065284	F075427	N/A	MCLRIDRLWRQEPGWFMSLDRSMQVQLLAEHRLLMETPEQAKKNAQRAKRAEFDRRMRRING*
Ga0075466_10065285	F038464	AGG	MMQTLTLSPLPDLQIRKPASYTALADLTVSWPTEPDSSTHRPHMLRCCAAAIGLVVNDERLQLPSYRTTSMDLVAYGESVIEVLIPRGVQLAAIIKGGRAVADWLTTTLPTEQEVSETADFTGAGASVI*
Ga0075466_10065287	F033250	AGGAG	MDVKLDTVRQLSPVFDAGGAIDLDVLRPVLEQHAASMVEDARSGWPVDTGISRAAWQAEIDVSPTQLFVSLINEARQRGRGYAVYIHRARSRRLVYTEVQERLTLNLIPALQADIAVTLAESMRG*
Ga0075466_10065288	F070658	N/A	RKHGEMRVLSAGEFIVLLAGAQDVLVQLRQGWPVVTGRSRAGWDVQAIQTPFIGYRVSNGVDYSQWVHRSGEGPDPLWQEQMLIIRDRILPPIVERLNRTITETEQYSQPVQQQAQRPLFLATPQQQTVDLFSQVRRLRRLVRSR*