Scaffold Ga0075466_1006232

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1006232
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4221
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F014834	Metagenome / Metatranscriptome	259	Y
F048927	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_10062321	F004523	GGA	MSTEIRSAREAMTIFKILGIKDVTTDRQRKNGTQVFELPIQQMYQSLIPKPLRFATYKAGYVRNVSEYNSSPYQINKTRKVSTRTSGYAYDTIDRILIHSWEERLIYLAKFIIKNYYQKPTYLMNDYVIKCLKEAYLRDYNNSPNNRLPFGDEVQVIVNGHRYNLS*
Ga0075466_100623211	F048927	N/A	MQLKISKSTNIIKLNNNTYIPFQLHQLPDYYQEISLTDQFKAKGYVYINKLALKSYNVDTHTLNKDLNYRLKR*
Ga0075466_10062322	F014834	N/A	MKDTNEIEKQLQRKADNYLEEKAREIFNIYQEINKYVGASQNFYDYITHYNQYKEARPEDKSDHTSYVEPNAMKKKFELELAMNYKKRLVAKYTKELLTKLDIFE*