Scaffold Ga0075466_1000070

Overview

Basic Information

• Taxon OID: 3300006029
• Scaffold ID: Ga0075466_1000070
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31606
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036659	Metagenome	169	Y
F059914	Metagenome / Metatranscriptome	133	Y
F072258	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075466_100007021	F059914	N/A	MNEIKLSLQENEANVLLQLIDIAVKAQGLQVAEAGSFLATKIQEQTKEQIVPQEEEGQ*
Ga0075466_10000703	F072258	N/A	MIKRIVSADEFCKVVDNVSSYLDLNEESNNYYYLVPNNGDAIKKAFGHDRMLAFNVFVWANLNNLGKYDAVIIFIKDKSPKHGQEIFSEYVWLSANPKAGYKLFATAIKFAKNNGFEYISMGISEKSPKKDKVKKLYKKLGFIKTSECYIAKL*
Ga0075466_10000707	F036659	N/A	MEEIFDKILAPYMSSLPEFVIAVMGIVGTLAFFAPEDSKLSRLLNKVTGRLSKLKNYLLKKLKK*