Scaffold Ga0070717_10008748

Overview

Basic Information

• Taxon OID: 3300006028
• Scaffold ID: Ga0070717_10008748
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7576
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F023475	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070717_1000874811	F004042	AGGAGG	MNGKHLGLLLLAGCLFVPQLQAQIKHIEMRVEGMT*
Ga0070717_1000874812	F000092	GAG	VKQHLQRQSGVANVDVSLIDGKVEVTPKEDGKVDPTQLLKATYDSGVSVAELDMTATGKLVKDSSGNLVLQVNASQSFVLAQNGLSKGLEPLADSATVLTVRGQLFKKGAGKQKKSEFSAALKLVLLEV
Ga0070717_100087486	F023475	GGAG	MKLFSVLFVFLSFPTALVSQEFSCPAGQADVMKYFAMSSDKRADHFLKGQPNPIFTKVVPDRDFAATGYWFWLKSPQAHGFDVKSFDEKNVYMRATELEWKDNATFKRFERDLPIAARCVAEGKSGPEIKVDDTRFRYFASCRPYKSSNVGRAVNDLDAPVLMDAGGNLGEVWTRVLHYHYNCDGQFQHCKDEEQFYLGNGYGLWQWKHFRNGELLKTALMHDFETGKAQATLSCEESYH