Scaffold Ga0070717_10002246

Overview

Basic Information

• Taxon OID: 3300006028
• Scaffold ID: Ga0070717_10002246
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13546
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F017965	Metagenome / Metatranscriptome	237	Y
F033229	Metagenome / Metatranscriptome	178	Y
F036885	Metagenome	169	Y
F038890	Metagenome	165	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070717_1000224614	F006278	GAGG	MFRAEIQWLASGPTLKLEGRLVADWAEQARSLITKDVVPKGLIVDLTDVSYVDSVGEQFLKWLASIGAAFVAGSVYAFTVCDRLRLSPIPRIAERRIRSMGVAARDHPSSTPIQLRSFEDP*
Ga0070717_1000224615	F001596	GAGG	MSWFHSSTAQIDARNHASPAEVVACFQDQRNVLGRLAFLITGDRSTADQAVVQACEITLQGNSPFRDWLLEWAKAATIASAISHVTNTIRICEAAYEDRRCPHVEHLSQGDDEERAAGLNLILGADAQGLLSKLDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWFHDVHARPVQHNHDTPQAGQEHGCG*
Ga0070717_1000224617	F036885	AGGA	VIAEITLSHLIRLGNELGCPVSRQQALAFLNQEGRAFEMWKHTMRAAEKFIPGSLFQHSFSSGVQTGFASQSRPLRLIGNAVL*
Ga0070717_1000224619	F038890	GGAG	MFQITAETCRAFTFAEVLIMAAINLESLRLSPEGRIRATGAAALSKYARHVVRTGVPTAPQL*
Ga0070717_100022462	F105952	GAGG	VSTPQGTRNTIQAASVGTSAVLGSRERLDARVTVLALERALAELGIHARLSDIVAKAQAIEHGIKQSRSRRRPEQTC*
Ga0070717_100022464	F033229	AGGAG	MYSTTSLNGVPTIRRDGHNVLGVWDQNWEFAKEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRGKVQHA*
Ga0070717_100022468	F017965	GAG	MSENIRHRDALYLFACHLEWDITRDLPAYHELIAALDDQDGDIRRVAEALLHRDSPRPAGCKTASEAS*
Ga0070717_100022469	F006399	GGA	MTTSALNSGVQSLVSEYGVFWQLWPQFEQTHGERRLVGFEVELIGSHTSDLNHVDPACPKCRNVRAVLLSIANLVPPDLALGLKSLTYNIDSHSGAILCLPALGNRSAVSVSIYLSWSGSKGPSFETDLLNGVKRSLNRLGIHQR*