Basic Information | |
---|---|
Taxon OID | 3300006028 Open in IMG/M |
Scaffold ID | Ga0070717_10000848 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 20252 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.4774 | Long. (o) | -85.451 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000281 | Metagenome / Metatranscriptome | 1382 | Y |
F001854 | Metagenome / Metatranscriptome | 626 | Y |
F004416 | Metagenome / Metatranscriptome | 439 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070717_1000084817 | F001854 | GGAGG | MKTLLSAILSLCFVVSVFGLTQDVPNEAARKTPAARAGTRLTTIMGTIQEDRDQLRFVTDQRAWNVDNPETLKGHEGHYVRVKAHLYPDKDSIHITEVNMPTASETKKDDMR* |
Ga0070717_1000084823 | F004416 | GGAGG | MLLNSTGVIPRSRYTEEAGLLRSKIDELNKNTVILIAQAEKLIQESERLSARVNTLENPRTEPKHS* |
Ga0070717_100008483 | F000281 | N/A | MRRPVKERIAKLREEIAQIREANRLYVQGGNKRPGAAPDQERRLQRLQEILDELMSLTEWKKP* |
⦗Top⦘ |