Scaffold Ga0075462_10011536

Overview

Basic Information

• Taxon OID: 3300006027
• Scaffold ID: Ga0075462_10011536
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2853
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009857	Metagenome / Metatranscriptome	312	Y
F063484	Metagenome	129	Y
F087931	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_100115361	F009857	N/A	VERINMIYNIKQKIINNLYESELFEPSIARTAHKAAVLVERIVESKEPRKELKKWLQEQTSL*
Ga0075462_100115362	F063484	AGGA	MASRTDFIMKKLTLELDQLAREWNRTRDPGIRDQWFKKVSQVQPLALAEARQLSRKKT*
Ga0075462_100115366	F087931	N/A	MKSIDDLTEVVQQCTQCDSQGEIMIDEQRIKTIFDQERENYKYRNKLTIDHVKTLEKQIEILIKDKAMLQDQLDKYINKEMEKR*