Scaffold Ga0075462_10010375

Overview

Basic Information

• Taxon OID: 3300006027
• Scaffold ID: Ga0075462_10010375
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3012
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018734	Metagenome / Metatranscriptome	233	N
F035960	Metagenome	171	Y
F105907	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_100103754	F105907	GGAG	MNNEKTDLKGHYGKPSEFALTTALEGIVSQVVNFWDKVQNDEIVGEKKKYLQALFNLNNELVEKYNANGGDATGYYMEWVDGKPYSVSLSGLID*
Ga0075462_100103756	F035960	AGGCGG	MKLNEWGLFVERLDGSTHEIKLNEELAGKVYDYVEKLKEDDKNILSNNTKGKLLW*
Ga0075462_100103758	F018734	N/A	MIGLGCQLIEGELEEVKINAIGYTEQGRALLDSQEHIFTEVFAEMEVLSAEQKLANLQKKYFKKY*