Scaffold Ga0075462_10010248

Overview

Basic Information

• Taxon OID: 3300006027
• Scaffold ID: Ga0075462_10010248
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3032
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F027168	Metagenome / Metatranscriptome	195	N
F048912	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_100102484	F022875	N/A	MNLTEDIKENIRLRAKAHINLTDPSTDHWDSIETPEGWIDVNIWQDDDYRGGEWIVTCYDTYHSTDDGCVHTDTSTFKRLAL*
Ga0075462_100102485	F009459	N/A	MSREITLEPTIMIEELMYWIHQNEMGADFIDPSNRFFPLYLELQKLKDKLDNDKHDLYHSVSADETK*
Ga0075462_100102487	F048912	GAG	MRDYDSWLTSFLDYEDDDLTDEEREELKALRELYLIQQYEENKLD*
Ga0075462_100102489	F027168	N/A	VNAIEAEMKRWGRATYRQFQQFYKESERGSELDSSKRVLSKLAPQLADPIEDFFNRFVSDDSPSMPIWLCYIADFHPQMVAQIALKTVLDKMYAETRHFSRLAAEVGKAFEEIARQRVAEHTVAKNRMYSVQHRKSKRSKMQRFYTVEKNNRRFTCWETRLKVSLGAWLLGEIERHTGLIEFRMERFGKKQRKIVTLSAQFSDWVRRFDTWKEMLDPMRMALPTK