Scaffold Ga0075462

Basic Information
Taxon OID	3300006027 Open in IMG/M
Scaffold ID	Ga0075462_10007306 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3591
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3591

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008746	Metagenome / Metatranscriptome	328	N
F021101	Metagenome / Metatranscriptome	220	N
F077245	Metagenome / Metatranscriptome	117	N
F105097	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_100073062	F008746	N/A	MERLISKLNRPPRRFNKDGFLKALNENSKQAIVAMRDSPELKKAVIVDVLQRFNKILKTAKFPDGVSMVPNGFFLYGGQVIQEIFQQTKKLVDPKIRAAMEMTPSSDYDGQIILKFKEDGKISAKENISKETKLKAFLKKAMTKAAEPYGALFNVGVRTKLPYVIDVSLSDAKTGFDYAEFHVVNGFMKDRTGNEYLERGSDRLAQTKCCIETLKSLGLPVLNVKSLLYDQLFALDSMLTGNSHRKAVRPDKCQQRFVRMTFLYDLMKKTKKSIPKDVQMLVKEIVERMDKPKYAKYFKQCSVKIH*
Ga0075462_100073063	F077245	N/A	MLCENSLITNIEIDMKTSLATLKVVCPHCGRINHHVVHNAAVRDETGIHIHFEYEKMSERYCAARKCGKFYELF*
Ga0075462_100073066	F021101	AGAAG	MWFAPIFVGIHSFFEHKFPIKKTHVIVNMFHMASVFTWNPGFVVSKSYFLADFFLLYKNRQAYPGLWQLLLAHHVVSYAILATEQESEDVDLALKWAEVSNLSLAVYELYPNIFTKTMRVIIYPWSRCVMLPMVLVESTKTLGVKALALGVPIVGGSFWWSWKIIKDFLRR*
Ga0075462_100073067	F105097	N/A	IAVGMWGASTALTYAHYRFCFPWFTIAEPCLSIQRSSVFLNTTIQNYGYMAVGLLVDAVLKYMPPVMRKSIKEKAPKEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075462_10007306

Overview

Ecosystem & Geography

Associated Families

Sequences