NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075462_10002113

Scaffold Ga0075462_10002113


Overview

Basic Information
Taxon OID3300006027 Open in IMG/M
Scaffold IDGa0075462_10002113 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6459
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F006845Metagenome / Metatranscriptome363Y
F013088Metagenome / Metatranscriptome274Y
F038657Metagenome / Metatranscriptome165N
F093807Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0075462_1000211310F038657AGGAGMDILGGMSNTEEKPQIYFGFKTMGQQFYANGETPIQFKYLQLDIDTFKSGWGRYTKADGFEYKWDAKFGVVDPKPADDWKRAFSCWVMPDGGHAMLWQRFTVAEAMAFNKMLGTFWHEKDANVGKLPVMEYKGSKPIQVGMGTSSELTFEFVKWGDRGFQVPDWYVDPDAPVDNDDGFVSPNEGLADKVAEMVAKTELSDDDIPF*
Ga0075462_1000211311F006845AGGMDLHSYLLEEDFEQYCRMSFDKILVACEFLGIINDEDYESFKERCYTQLETDYINSIDRTIH*
Ga0075462_1000211313F093807GAGMTQYSDIVETQRLKLNKQKDEWYIHVNNGAGYTEVKDGDTLTITYHATGKKEIFIDAN*
Ga0075462_1000211314F013088GGAGMDEVIKKALWIPEELHKDIKIFAIQNNLTIEQASQMLIKLGMVTYEAEKNNDSV*
Ga0075462_100021137F002221GGAGMKTYLDESFESELKKLRIYESESFERWGSRKRIFKMLGVDFEIKFCRAESMFKDALYKGHVKEKIKMVEMMTRAFDSLNKKCEQSGYTRIQPNTRCFNFDKKTALVCDTDDEKPILQKIHKDEPDMMIFSIEELLRCIPEDFMKAKELLSKLDKAVNFQRISYD*
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