Basic Information | |
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Taxon OID | 3300006027 Open in IMG/M |
Scaffold ID | Ga0075462_10000518 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11973 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (79.31%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006094 | Metagenome / Metatranscriptome | 382 | Y |
F011124 | Metagenome / Metatranscriptome | 295 | Y |
F050370 | Metagenome / Metatranscriptome | 145 | N |
F052566 | Metagenome / Metatranscriptome | 142 | Y |
F077246 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075462_1000051810 | F050370 | GGA | MYQHEVYIPCAMGRQTFEDAKTLLTNIHGGCTAYHSVGHWNNEGTNTDGTTNSVQMREEVWVVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIAARFNYDS* |
Ga0075462_1000051811 | F052566 | GAGG | MTADYVYPRLNGGTTLCYGVVEEDSNFSVVCNDENQDGIWCGDLEFLPTNWNQVCKYLEENYNPNIEQLETC* |
Ga0075462_1000051813 | F011124 | GGA | MFDIGKSYSVLVWDMPVSVFDNELDDYIRNEDGTVKLFNIPNYDYSYVCDSVDVDELQERKEGDKYD* |
Ga0075462_1000051822 | F006094 | GGAGG | MLLHEFYSDDDCSRGDSSYRKASVFKEPDGSYTITMVQDAAIIEERNIKGHSEQYAEDCAENWVLGVIK* |
Ga0075462_100005187 | F077246 | AGG | MDLSNNKIVVIPESWDDINNYIKDTFEYKAYATVLALMVENYTLHEFSKMSGYGFSEWKQEYLKDVEIKN* |
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