NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0075462_10000518

Scaffold Ga0075462_10000518


Overview

Basic Information
Taxon OID3300006027 Open in IMG/M
Scaffold IDGa0075462_10000518 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11973
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006094Metagenome / Metatranscriptome382Y
F011124Metagenome / Metatranscriptome295Y
F050370Metagenome / Metatranscriptome145N
F052566Metagenome / Metatranscriptome142Y
F077246Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0075462_1000051810F050370GGAMYQHEVYIPCAMGRQTFEDAKTLLTNIHGGCTAYHSVGHWNNEGTNTDGTTNSVQMREEVWVVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIAARFNYDS*
Ga0075462_1000051811F052566GAGGMTADYVYPRLNGGTTLCYGVVEEDSNFSVVCNDENQDGIWCGDLEFLPTNWNQVCKYLEENYNPNIEQLETC*
Ga0075462_1000051813F011124GGAMFDIGKSYSVLVWDMPVSVFDNELDDYIRNEDGTVKLFNIPNYDYSYVCDSVDVDELQERKEGDKYD*
Ga0075462_1000051822F006094GGAGGMLLHEFYSDDDCSRGDSSYRKASVFKEPDGSYTITMVQDAAIIEERNIKGHSEQYAEDCAENWVLGVIK*
Ga0075462_100005187F077246AGGMDLSNNKIVVIPESWDDINNYIKDTFEYKAYATVLALMVENYTLHEFSKMSGYGFSEWKQEYLKDVEIKN*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.