Scaffold Ga0075462_10000313

Overview

Basic Information

• Taxon OID: 3300006027
• Scaffold ID: Ga0075462_10000313
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14560
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (29.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012872	Metagenome / Metatranscriptome	276	Y
F013704	Metagenome / Metatranscriptome	269	Y
F025860	Metagenome / Metatranscriptome	200	Y
F055664	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_1000031323	F013704	GAGG	MEFKRKMLNGQRFEINGMEFICLETHIALQTRVDGDEPDIEVGGSYYIVRNTSTGGLHRIPFQRIIEKEKQIKWKI*
Ga0075462_1000031324	F012872	N/A	MSLHFEGNRLYYLEKEAELYKCLTYLSQELGNQEPMNQEQLWEVFHICSDTAAVYRHITDYFTTLDKLILDAQIENGKLKQEVYDLKKENVKLQKALEGCMDGV*
Ga0075462_1000031328	F025860	N/A	MNTENNFYQVIDDLEAFADQIGSEWLKERAAMLEAHYAQLETLNNQL*
Ga0075462_100003139	F055664	GAG	MGKSEQILVNRKNLEMFISILTQVHLRGQLSADEQAFLGKFVELPPAPTQPNRSQRRLNQKVINDIIREERKRNMKK*