Scaffold Ga0075478_10002338

Overview

Basic Information

• Taxon OID: 3300006026
• Scaffold ID: Ga0075478_10002338
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6874
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007266	Metagenome / Metatranscriptome	354	Y
F024116	Metagenome / Metatranscriptome	207	Y
F028832	Metagenome / Metatranscriptome	190	Y
F044154	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075478_1000233810	F044154	GGAG	MVKLNTNISIENVITVIVLIGSMTLAYGFMKADISTIKKELTMKVDERSFQADRNLIAFQLDVMMEDIKEIKQILKERK*
Ga0075478_100023383	F028832	AGGA	MLVRKCAQGHKVYIFKPRGNGTNTYRFSADEEVSFDAQDNSYVVTSDGAVVSRTNSWITAQSDYDAQCQNHHSDTIGAIQVGRHTLINGVATEL*
Ga0075478_100023384	F024116	AGTAG	MNEDWKDYVSIIAFLIIVLGGLVLLGSCDGGWSIAGYEV*
Ga0075478_100023388	F007266	GGTGG	VKSEAISDSSALSISLPMIIQAVTFIVMLVWGYSQLNARISFLEYQVAMNEEHIIDLEEDAEKNQDAEIPADIKQNQRIEYLEREVERLRNQ*