Scaffold Ga0075478

Basic Information
Taxon OID	3300006026 Open in IMG/M
Scaffold ID	Ga0075478_10002238 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7043
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7043

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F020001	Metagenome / Metatranscriptome	226	Y
F034542	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0075478_1000223810	F001215	GAG	MASTSTNKQPCLVDRPFLRGARITSSTPVADPTNPNLTDLVQLVRVGDLPSEDAALVEDIAIVSNEDYPDNSGMRTADIGLYVYMPNQAAPSTSAALMVARVEVGLSGSTVGYPQSIQLLATNAPTPQVGNVALAAPIEIGKSEGLYLEKGYILCAGYLGEGNAAVSGGLSPSGITVLAQGGFY*
Ga0075478_100022385	F020001	N/A	MSDGKTLLTIAETAELLNCSSGFVRKRIALSEANQPGGWPTSVYVNLQPNGAKSLYRIKKDALEEYLQGTSAAKVETVETEMAIAA*
Ga0075478_100022389	F034542	GGA	MARRRGSDSFNFNSFKANNGINKVPSVKGSDNQGALLRPLPFERRFRPAVGTKDFSVLSDYDYASLWSRWRRGYELSMYAQEAYGGLTYSFKYFVSGTPGVGVFLPGLCFMYPTTRSDMKMWMVGVRPRDSFRFIDFDYAVQSVTTYNDTTYAVRLSSNFGAPISFFTGEVVSNRFNADGTDKRFGFNNYTVTAVGINGVPVTPSYAPIFNTLFLSFAATNSWSVVDENTMTIPASGPPAVGEYLTTEMRTQCTCPDFLGREGFDLYQASIKRKYPYTGVLNTAPGYYDAGVDQTNRISNSLDNPGFARTFGFIYTNEIYNIPSYTQPVYSDPNFFYYQPKWCKHIYAAMWDLQRKYGQENMTAPWLPQPTDEPMNEYYREKFDRDLKKQSDFLRREKDLRWWQRYSPTKDDMPTHMTYPDMYNMMSKTLNYGDLSGPSTINKGYFEMFTVDEFDPFAPINFDDLTTYDGGTYENGVLVEQPTNILDGGEYANGVLIPPTGFPSLVNGGTY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075478_10002238

Overview

Ecosystem & Geography

Associated Families

Sequences