Scaffold Ga0075478_10001794

Overview

Basic Information

• Taxon OID: 3300006026
• Scaffold ID: Ga0075478_10001794
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7845
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004106	Metagenome	453	Y
F006983	Metagenome	360	Y
F010994	Metagenome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075478_100017942	F006983	AGG	MSKARGGHAPVDYTIGAEVINDTAVHTGKFRHIDFYENSTITAIVSTNVIDNNFAGASVDQDAHLAGYFTSIQLQNGACIAYKI*
Ga0075478_100017943	F004106	N/A	MSRFIPIDPSYSIGADFVNDTSTYNGRWRRITILKGNTSFAALTAQNWTGNSIIGEGLPAGFTIEGVFTSFELNTGGAVIAYKV*
Ga0075478_100017948	F010994	GGAG	VHDMDLPSLRHFRSEGIYTISSDPVEALIGEAWVPAKYTDRGWATADGSTLLTGVEDWRYAVEEGQVAGCDISKHPQRDESRQATKAGSSNRVRKSRKKPQAQA*