NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075478_10001212

Scaffold Ga0075478_10001212


Overview

Basic Information
Taxon OID3300006026 Open in IMG/M
Scaffold IDGa0075478_10001212 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9444
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036202Metagenome / Metatranscriptome170N
F050358Metagenome145Y
F061821Metagenome131N
F080003Metagenome115Y
F097263Metagenome104N
F105098Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0075478_1000121214F050358N/AMETILQQLEEAKQRLSAAQTEYAHCFARGDFTECGKAKRKVAKQMKEVQFLVAQKLALR*
Ga0075478_1000121215F080003N/AMKTFEVGQVYFGTLCVAHGDFPVMCVKRTDKSVWFEHVNMPQHYAAGRCKAQKFDDGTEAAMFRGWYISSTKLTGGDFDPYTI*
Ga0075478_1000121217F097263N/AMPRLKRPRNNPGKEVPDHLLFTALRWETLREQYFKSIGRLDDAMEAHYLRTIYSKRLWDEHGISVDLK*
Ga0075478_100012127F061821N/AMSKIEVRVYLTPEERDHIDAQAQALNLNRSQLMRLRALGDPAPGVKPSAPPISLRQYQNAVLAALRASNGSCSRPIVEAITAAVLCSVHEPPNKQPSPNPSQTVG*
Ga0075478_100012128F105098N/AMPTQRLTRLSTEEGARTILRRMIDAGRCTVEDLDKAPPGHINPQAYRNLMRDIAPQPRVEVVSPRDLPTKTPEEPLPF*
Ga0075478_100012129F036202N/AVLPLFDYANRGKCVHQVFDNKERISPKNVYRIATSAMFSETELGEVRFHYSPVNSEHAIGMYDKEGYYCTYCPPIPGASGSRALGRWVRHPWAEEERQRLEAFD*
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