Scaffold Ga0075478_10000315

Overview

Basic Information

• Taxon OID: 3300006026
• Scaffold ID: Ga0075478_10000315
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17678
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007971	Metagenome / Metatranscriptome	341	Y
F016805	Metagenome / Metatranscriptome	244	N
F025016	Metagenome / Metatranscriptome	203	Y
F084178	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075478_1000031512	F007971	GGAG	MAVKSKTALGRVEHKAGRPKTTSQGYGQHSRPRRRGKKPLRGQGR*
Ga0075478_100003154	F084178	GGA	MIVEFSVEEELRIESQARTVLHCGDSQQVAKLCASLVKQNAYLSRLVRQATGHITQLELMQVLEGLDKPDPERSETVRLLCESGNWDLTHQNDTRDRSLFVTLLLIALAPFPWLVGAFAGLLTTVMRTMTQVIRGLAS*
Ga0075478_100003157	F025016	N/A	MDPTTIAVIAIVAAAGSEVLTLLPIRSNSWVQLLINVLNVIARKK*
Ga0075478_100003158	F016805	N/A	VDPFLTPLVTAAIIAGVGALWRIDKRASVMDTRMALILEQITALRSDHKERLDDHEQRLRQIESRS*