Basic Information | |
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Taxon OID | 3300006025 Open in IMG/M |
Scaffold ID | Ga0075474_10044382 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1519 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F018534 | Metagenome / Metatranscriptome | 234 | Y |
F020115 | Metagenome / Metatranscriptome | 226 | Y |
F025729 | Metagenome / Metatranscriptome | 200 | Y |
F029600 | Metagenome | 188 | Y |
F048249 | Metagenome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075474_100443821 | F048249 | N/A | QTEHMNNKTINKMKTSIFNTRIIRKGSQVLYRGSWGRDPQTIAEVIAIEQTQSAGEKYGDEVDAVSLDDHYVLTLNDGHWCYSYQVDGLVQLPETESVTK* |
Ga0075474_100443822 | F018534 | N/A | MALPTLTDFLNSWDKLIVTGMTPERSDSVMTTTTDNIPVAIEYRHQISPSTGECSTIAFLVAYDENGNRCTLRNQTYGCFDDEEKQFHKWFAGKMATACGLDVSRRLDVARAVDDWLAQ* |
Ga0075474_100443823 | F025729 | N/A | MDKAILDRLVYCEETYAGESETWQDPVTGDYYYVPIEIVRDWDNAMNLNDPN* |
Ga0075474_100443824 | F020115 | N/A | MTHEQFEIFRQWADRVANTANDTDTHIRPIDIVHDIAGILANDEHFLPRL* |
Ga0075474_100443825 | F029600 | N/A | MKYWNGKGQYQDLFDKHFKNLVPEIGRADTAGGNALRAIAKTNYDVFNNGAGNIVNQYEEMDDDGDYYTGYEINRWWEEYFDDIEDYSRLDVDRLKRKIIEYVQYDKDYGLSDL |
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