Scaffold Ga0075474_10039468

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10039468
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1630
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F036016	Metagenome	171	N
F069852	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_100394681	F069852	AGGGGG	MKIKVTRADIQQGEAGNSSECAIALALQRHFKTNCAYVDGAFDRDGPILKVDDKELKVSEKDIYNVGTFIDLFDDYVINGDDVSIDETCIPQPFEFEVMEGK*
Ga0075474_100394682	F005373	AGGAGG	MNEGLENIKQIEGLEKKVLILCDLLSQMCCNADEDTPAEYRTKHFRDAMNESYEYLEEIGYLKGDK*
Ga0075474_100394683	F036016	AGGAG	MMDIETIVAMNKEQGRKAKRNGREPTQFEEEDIIQAEEGLLTPLKKITNLGNYIPKGWKRFNTNELKDQLGLPYDWKFLDNGGLFVDSSGFGSDNEPALSVKQCLETISKLFRIRDDLGFAICSEGQFQLTIGVYEEDK*