Scaffold Ga0075474_10036320

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10036320
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1712
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001702	Metagenome	649	Y
F009440	Metagenome	318	Y
F040177	Metagenome	162	Y
F048298	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_100363203	F048298	AGGA	MKKQYTFWRDVNKRVREECTIEASSLDEATKKHNEGYCNYVEVDSFDEHEILDEGTIENEDQQ*
Ga0075474_100363204	F009440	AGG	MKAKNYKSITEILTKKYQCEFYLFMDLEDCENRIKQKRKDR*
Ga0075474_100363205	F040177	N/A	MKKPIKKEIENFKKYVWSFYGRGEGLYKDFFGNNLKMKEVERAIEIRLSNMKLDFDGDSIDREIVRDIIFKMRDPKAQTEHEFKFKIER*
Ga0075474_100363206	F001702	N/A	MNKEQKQIKKVIDKAFSQLHVLSNITWTPYRDEIFNLNKKDEKQHRFNRPSSDFEASINDCAKMFTVKHIAESLLNTEKWTVKDLLRIKKSCLYSQSVVENYKDKILDAWKDQDLKQLASLDYISLIDWKHYTEILERRSA*