Scaffold Ga0075474_10018756

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10018756
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2533
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008883	Metagenome / Metatranscriptome	326	Y
F024320	Metagenome / Metatranscriptome	206	Y
F026889	Metagenome / Metatranscriptome	196	N
F056586	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1001875610	F026889	GAGG	MNNVIEEYLALVERTVYHSDLDAFDALEQLEEDYPELADLVYQSAGPLAYDIQNNEVTS*
Ga0075474_100187562	F024320	AGGGGG	MTFEEYEQGYYSGDSEDPSGPPEDPETHAMIEHLVEFDTEMYRLDSRRKYKGLSYKHLETLMVELHGREWRDAL*
Ga0075474_100187566	F056586	AGGAGG	VKRTYQVIMTKIYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDIEPADYLTLREED*
Ga0075474_100187568	F008883	AGGAG	MNFGRYTIWYNHEDHVWDIYDGNKGYKYPEYTINNYSRLLCGLRDRFGFLDTDRNHRRFWRVMRWWSKLRHGRR*