Scaffold Ga0075474

Basic Information
Taxon OID	3300006025 Open in IMG/M
Scaffold ID	Ga0075474_10011610 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3345
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F036720	Metagenome / Metatranscriptome	169	N
F060729	Metagenome	132	Y
F060933	Metagenome / Metatranscriptome	132	N
F068898	Metagenome / Metatranscriptome	124	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

169

Metagenome

132

Metagenome / Metatranscriptome

132

Metagenome / Metatranscriptome

124

Protein ID	Family	RBS	Sequence
Ga0075474_100116103	F068898	N/A	MIASKAEIKALAFSNTFDMNAVKDNLIQLVEWEQVLSLFGADFYDDVVANPASYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPTLWKGEPKDDQIINKIIII*
Ga0075474_100116104	F036720	N/A	MDSIYVTNYFTNGIESSFILAAFFFLLLAFVTSKWFQFTIRDIESERTPLEVSWEFWWLDNYNSVISFFLMCFPIIVFTEDLVHWLGLNFLPDSMKTENPMYIYYIFGLSFGWVLEMILKKAKLIRNAQK*
Ga0075474_100116105	F060933	N/A	MDKVIIGAILLIQSLQTESFKNKIIDVCLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIFTAVVILVASLFIRRWWSKRFK*
Ga0075474_100116107	F060729	N/A	MKLAELKEKIYELNLKEFDGMHLGSGTILDAQKFVQNHITFLESNPNNSTFLLYYNRLFEFYNKTQNNEM*

Protein ID

Family

RBS

Sequence

Ga0075474_100116103

N/A

MIASKAEIKALAFSNTFDMNAVKDNLIQLVEWEQVLSLFGADFYDDVVANPASYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPTLWKGEPKDDQIINKIIII*

Ga0075474_100116104

N/A

MDSIYVTNYFTNGIESSFILAAFFFLLLAFVTSKWFQFTIRDIESERTPLEVSWEFWWLDNYNSVISFFLMCFPIIVFTEDLVHWLGLNFLPDSMKTENPMYIYYIFGLSFGWVLEMILKKAKLIRNAQK*

Ga0075474_100116105

N/A

MDKVIIGAILLIQSLQTESFKNKIIDVCLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIFTAVVILVASLFIRRWWSKRFK*

Ga0075474_100116107

N/A

MKLAELKEKIYELNLKEFDGMHLGSGTILDAQKFVQNHITFLESNPNNSTFLLYYNRLFEFYNKTQNNEM*

NMPFamsDB