Scaffold Ga0075474_10010457

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10010457
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3550
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005467	Metagenome / Metatranscriptome	400	Y
F010653	Metagenome / Metatranscriptome	301	Y
F017421	Metagenome / Metatranscriptome	241	Y
F043151	Metagenome / Metatranscriptome	157	N
F046716	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_100104572	F046716	GGAGG	MLEWIKKLYKRYERFTLEQYDVSPIVYKIGTKKYIKKKQFSKGPVPRTRYEK*
Ga0075474_100104573	F017421	GAG	MYTLEKRKMIYIMTRKPVWYHTHCITPWRGTPLWYDPSWVIGDCELCRMDIEGQDWWNGSSYRNSQKRLFDNIELNKKYWY*
Ga0075474_100104576	F043151	AGGA	MIPYTDQENEYLSSGSYRKSNTNKQRKVKQGPDLRKHDWAIRTTIEVDGRTYIVPVQV*
Ga0075474_100104577	F010653	N/A	MIMTVCAFGFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQRVIVYEEIQHIRSEIDRIVAELVTHDQAQHPLP*
Ga0075474_100104578	F005467	N/A	MPRLATAPLQCIITCMSKPQYYYVMCEKGTLIHRCYVRMDPASADILHDSLESRYDLVQVCDVKQSEVDPALLITPAP*