Scaffold Ga0075474_10006621

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10006621
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4601
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007417	Metagenome	351	Y
F008595	Metagenome / Metatranscriptome	331	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1000662110	F007417	GGAG	MQTRYTLQVQLPSLGWVVAMKTNDLFDVASKRARLIAQGHKVKLTKEKK*
Ga0075474_1000662116	F008595	AGGAG	MSKEENKMENQEPVIITFNGTEYRAADLNEEQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEVEVVEEE*
Ga0075474_100066218	F034894	AGGA	MNVTFNLLGGGQLHIPARSISGFYKDQYTSEVIVEVGDQEYKVRDSLDEIKYILGIAR*