Scaffold Ga0075474_10003831

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10003831
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6208
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F009699	Metagenome / Metatranscriptome	314	Y
F016269	Metagenome / Metatranscriptome	248	Y
F017473	Metagenome	240	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F024111	Metagenome / Metatranscriptome	207	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1000383111	F020115	N/A	MTYEQFELLRQWADRVANTANDTDTNIRAIDLVHDIAGILANDEHFLPRL*
Ga0075474_1000383112	F025729	N/A	MDKAIIDRLEYVEETYAGEMETWKDPVTGDYYHVPLTILRDWENSEKL*
Ga0075474_1000383113	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGTTVAIEYRHQINAHNGETSTVAYLVATDSNGNRITLRNQAYGCFGDEEKQFHQWFAKKMAGAMELDARRRRDLSDGIDMILAS*
Ga0075474_1000383114	F048249	N/A	MKTSIFNTRIIRKGSKVLYRGSWGRDAQKIAEVIAIEQTQGPNEKYGDEVDAVTLDDHYVLTLNNGHWCYSYQVDGLVQPTENQSVAK*
Ga0075474_1000383117	F027835	N/A	MKTQQHIDALYERRKTAGGFESALIDAYMKADGGNAKLLEDAFKGTRFDLTPKPKYNHGVEVLRAAAYWSGERDEYLNDDKTAFQIINEYLISASSSTYNFGDE*
Ga0075474_1000383118	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSIGIMDNREFYVPKYGYVVGGIVPEKSCDMDNEMAFTQTYNRFFYQAELALERESAVVIGTWVEDGKIVFDLCNVLDDEQEALALAAKRGERAIYDLENEKEIFVK*
Ga0075474_1000383121	F024111	N/A	MSQPIFAFVFPFGEHGGEFRCKRNFADAESAANWAVDIILKEGDDCCYFKEVESADYVFEPACESHTVVCWHDDAPTWEMYDVID*
Ga0075474_100038313	F008453	N/A	MTNYAVYRIFRDWNKRPKVLMDGLTREQAQTIVRNTPSEEDSMVVFDEMK*
Ga0075474_100038314	F017473	N/A	MTTQRKEEHIRNIAFCIKTGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDAFIEQNPDINE*
Ga0075474_100038315	F016269	N/A	MKVNDFIFLCEEYNIDPVIASEDEGVRKILKTPTSDVNQQLMLSGYLHKNF*
Ga0075474_100038316	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKAMDAKQKSLARLMETDHEEIVSSTDGMQDIIIIDDDNSEHEIVKIIELKPTWPENKDVREYLVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFDVEVFHEFVNDLWYGGAAMFDADDICIYYFKLPKLID*
Ga0075474_100038317	F029600	N/A	MKYWNGEGQYQDLFDKYWKALVPESGRADTDAGNALRAIARINHDVFNNGAGNIVNESMEVDDDGEWYTLYEVERWWDEFFEELCDYTGLDVDRLKRKIIEYVQYDKDYGLSSLIDDYIDHIILKIDNQLVTK*
Ga0075474_100038318	F032639	N/A	MLDKNKKLINEDGFYAGSELMWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLKAEEQ*
Ga0075474_100038319	F009699	N/A	MMTDKEAQAFMQKVDSSAQFWQELHDEDAPTMQIQGNTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQDDAGQE*