NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075474_10003609

Scaffold Ga0075474_10003609


Overview

Basic Information
Taxon OID3300006025 Open in IMG/M
Scaffold IDGa0075474_10003609 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6408
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F024767Metagenome / Metatranscriptome204Y
F032994Metagenome178Y
F045065Metagenome153N
F071094Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0075474_1000360910F071094N/AMTTFLLTAILFLVLLVVGLLVYLLYAVRAIIDTQDVIFDAAVNAEEMYKEIEMNQEAIMNAHFKQN*
Ga0075474_1000360911F024767AGGMDEAERLNVKLNGVTGNADPTKNRTMNHLQFELTMSNEQIPAFIRLVARKAITDLRTAPVDAGTTHIEPWVFWKLVKFAKAEPIKSGKYTFIRIYDEEHNSVDIQTLNS*
Ga0075474_100036092F045065N/AMTESQKLIGTRGCKLLTGTGALTSLKGYAIIAQEDTVFTTFEVDGVDALADFGLTGATVKAGAYIVVPSGDAITAITMSSGSVIIYNQ*
Ga0075474_100036094F032994GGAGGMNSIINPTVRTYWITFDGDDKTSVLSYGWTDPNQRTDTIHVWETTTDEEVWIARLLEYGIVPEIDEQGNLVL*
Ga0075474_100036095F006492AGGAMNAILESLANYGIAGIFLAVLVYYLNKLTDIHREERKEWQEANNQHVDKFSDVIAENTKALTEMRSELKENRCKM*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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