Scaffold Ga0075474_10002745

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10002745
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7408
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F025941	Metagenome / Metatranscriptome	199	Y
F028791	Metagenome	190	N
F064684	Metagenome	128	Y
F090328	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_100027451	F090328	N/A	EFIWVGFDDSGAASTEWLGYLITSTAGLGAADGVHKAAISLATVSQYSGRTIRIYGLEYSTDQSGSITDYTDLAALTKTAAYLEVTADSGNSAISGDVTSIIEELQGVSGWSTSSLFQFIIEDTGAAATGLDTRLQIDGRSSINSRLSILMDDGSSLTPSVGVIP*
Ga0075474_1000274510	F004131	GAGG	MRAKRTTVVADVSQFPFSAMRRQLITPLVREAAELLWPAEQRRVTVLLRAPEYWDECANADLEASEELADICFDLWVGATA*
Ga0075474_1000274512	F002942	AGAAGG	MTEEQFTAFCVVLAAVSVPSVSLLFAMAWELWQYAKRVQP*
Ga0075474_1000274513	F028791	AGGA	MMKWWNVLTVLAVLTGGADAQGQGYDNILWSPKIDDIPETPFLPVIQDDKGELLAHSSENIWGMVWTSLPEDGLNNHHKREFSVGDYHYLVENRIPSPVEDDWSLGGTLHHRNGALDFHSARRYYAYATVEQKWAADRAGWIHIPISADAEGHWVMINGQIVWEIPVGERFTGEITAYIPEMTDTLKLEWGGKNDAADIRIEPARFYPDTTVPEPSLGDLIDLIGNGVGGLIGW*
Ga0075474_100027455	F025941	AGGAGG	MALPDYIQITQGTAIIWGESGATGPTVTHNLSVDALANGAARQGDYADLGANWDDEYNVYLFVETGTAPTAGTTVEAYLVSTWDASYWPAKVTGSDSAYTLGTSDANLRQAGPPVVSLVATADANTVLGQAPSIWRPRGRYVAPIIDNNLGQAFRDETTATDNGTRLILIPRRLVIND*
Ga0075474_100027459	F064684	GGCGG	VTFQGVKTVNDEQRIARAAVKIAGSIFEDCDESTLVAKLQHCCAWRNQGTEDDLTQADRDGLRLLLDAAEAAAGVFSEA*