Basic Information | |
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Taxon OID | 3300006025 Open in IMG/M |
Scaffold ID | Ga0075474_10001550 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9653 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (91.30%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001655 | Metagenome / Metatranscriptome | 656 | Y |
F002858 | Metagenome / Metatranscriptome | 525 | Y |
F008883 | Metagenome / Metatranscriptome | 326 | Y |
F023856 | Metagenome / Metatranscriptome | 208 | Y |
F026889 | Metagenome / Metatranscriptome | 196 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075474_1000155010 | F008883 | AGGAG | MNFGRYTIWYNHEGHVWDIYDSRKGFRYPEYTINNYSRLLCGLRDRLSFLDTERNRGRFWRVMRWWDRLRHGSTAYGRGRR* |
Ga0075474_1000155015 | F023856 | GGAGG | MRCKACDRILEESELTRKDTHGDFLDLCGICLSATATAGVDTDTMEYYQYEIFTDDENCDTLY* |
Ga0075474_1000155017 | F002858 | AGGAG | MFINERSIYVVDGGDYSIYCLGYTQARAVTNDIMKQDPWGGIPFVLRQDLELSFDDKGNVVMSRQTLDKILFLASDDLPQSESEL* |
Ga0075474_1000155018 | F001655 | GGA | MNMKQPENDHTKMFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPEGYVHIQTIINQEYVNMV* |
Ga0075474_100015508 | F026889 | GAGG | MNNVIQEYLALVERTVYHSDLDAFDALEQLEEDYPELADLVYQQAGPLAYDIQNNEVIS* |
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