Scaffold Ga0075474_10000141

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10000141
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23857
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060729	Metagenome	132	Y
F061811	Metagenome	131	N
F064578	Metagenome	128	N
F076041	Metagenome	118	N
F079882	Metagenome	115	N
F090102	Metagenome	108	N
F091643	Metagenome	107	N
F101256	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1000014111	F064578	N/A	MTRAKTEAFIQGITDGTFQGDAATIYNLIRDKHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGEKYSLFRITQSDQERYECAKIRHDEKIEKLRKKADELGYFLVKKMW*
Ga0075474_1000014112	F091643	N/A	MEAGSKVKVYLGNVAACYGIATGRAKEMNGVTIYELKECEPFQIEEADHFRDANQVSFDIKFAKEIKTYNDMERFYVNISTLNYFKLKKECFKFEQQTLF*
Ga0075474_1000014117	F079882	GAG	MATIKQISLIEPQMAIFVIKKLLHQVNDEAISQAISKLKDEDFEELVNILMWLGYEEKTINQILK*
Ga0075474_100001412	F060729	N/A	VKLHELKEKLSQLNLKDYDGMHLGSGTILDAKRFVENHISFLESNPNNSTFLLYYNRLFEFYNKTQNNEM*
Ga0075474_1000014120	F061811	N/A	MDIQKLTDSELSTLIKECRLELEQRKQSLEDVLLEDDFQKYKSKYARLTLFYDFCRGVYSVTESELKEKNQSKKKRNIRNAVINYLLSEGFSHQDIVDEFDLARTSLSSPISYHEKYYKLDKNYTDIFEDVKQFFED*
Ga0075474_1000014128	F090102	GGA	MNEYRITANGKEKKIVKLPTGRHEVTLEQWNNAYKYVELAVEANRLFEEGKLEKSQAKVIESMCGTIAALGEGITYEELLNVEFNKINNLFLIQFGWLSEEKPKRNFKIKGKKFSVPKFEQGTCGDFMDVMSLLAMHEEYNDAEKGLLIAAVYMRNGEYYQDLEEINQRIEFLKKYGRMDLFYSAAFFLLSSLRSYKIDTQRHSAVVREMEKLTSTLVSWATILFSQVSQRLESFRTT*
Ga0075474_1000014131	F101256	AGGA	MSQLGDFLKKAIEEEMEFNKRLASGESVATLREEIKDEHLLIYGVDYWDEINNGVPSGTLVDIEDLRSWVNAKSQRYGGTFPPITAIQRRIYAKGSSTPKEKLDIIPKVIKKNQAEITRQAENYVTNFLKLR*
Ga0075474_1000014133	F076041	AGCAG	MAIALTTQPTTDGLYSAYLPVKFVATETTNDPAYLEFELKTQAGASIPNVPKYRALNVNNTFTFDASNYLKSILNVFTTQGYSTTAIEHLDDLYGKYEVEVTDPINSLTALTSNEFYAFANIDGLRYSNDQTANDGINRKGMLYGSELFNGSFAPKYQGAYDRCVVFAQSPEISIVTYDADKPNQYTTPKQFAEIDISSWTNRLISVPLNRTFLATNALVPPSSTPLSKYAGFKASHASLGDMYYYVEDRCKVNEFMFINRYGVKENIKFETYDYESVKTSSESYLVGGYTHTGNTNFFNTSANNVKVNQSIVEDYEVRGNFFTSRHKGELQDFVSSPLQWVVDNGELRPINVLDGSFKLVEKSRGIDFNFKYRYAQTKPSFK*