Scaffold Ga0066371_10010611

Overview

Basic Information

• Taxon OID: 3300006024
• Scaffold ID: Ga0066371_10010611
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2425
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066371_100106112	F001993	N/A	MGILSLTSEQLRYKMKHLDSLCPNRSVTNDDEFYALYSKFMEVIEDTNYNIDIVDCLTALHCAMEDFEMYA*
Ga0066371_100106114	F004453	N/A	MLIDFTEYELETIANAMDDYINYDDEKLNTEFLFGGLSVADRVTSIQNKIDKVFNN*
Ga0066371_100106118	F004764	GGAGG	MHYANFGLEKNVEILSAHHVERFTQLRENEQYQDADAIAQEYVCKGEVEDDNYQWLYVNYQFKEAN*