Scaffold Ga0066371_10007877

Overview

Basic Information

• Taxon OID: 3300006024
• Scaffold ID: Ga0066371_10007877
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2782
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066371_100078772	F004764	AGGAGG	MNANLEYNVEVLSEHYVERFKQLMENDQIDDANAIGQEYLCNNGEVDDDNYQWLYVNYLFEEAN*
Ga0066371_100078777	F004453	N/A	MLIDFTEFELETIANAMEDYMQYDDEKLNTESLFGGLSVANRVNSIQNKIDLVFKNNI*
Ga0066371_100078778	F014388	AGGAG	MSSLHHENILEDCFEVAMESFRVNNKLTHEQLDELITISKGTYDAICSNAYKLFQDRCI*
Ga0066371_100078779	F001993	GGA	MNAKQLRYKMQNLDSLCPNRSVTNDSEFHELYSKLRDLIEDTNYNIDIVDLYSALHCAMEDFEMYD*