Scaffold Ga0066371_10006011

Overview

Basic Information

• Taxon OID: 3300006024
• Scaffold ID: Ga0066371_10006011
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3124
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066371_100060115	F037769	GAGG	MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPAPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPRDYNNQDDFQDALLHRLHLAEHFVSINKYIDEHLDYAKSHIPPQAP*
Ga0066371_100060116	F012584	N/A	MKLKPYLPENTFILSEDSLPKEHDTDRFGKIMVFRKDVGWSVISLTDAVQFLAMKHTHWTYTPDTPYD*
Ga0066371_100060117	F016820	N/A	MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKTALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPKDIFEKCEDGFCPMPTPQTQEVS*
Ga0066371_100060118	F006793	GAG	MTNTRSNNEQMEERVNYAADQLAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVAKKRKKKYGDLDALDNTDIPF*