Scaffold Ga0066371_10005545

Overview

Basic Information

• Taxon OID: 3300006024
• Scaffold ID: Ga0066371_10005545
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3241
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025518	Metagenome / Metatranscriptome	201	Y
F029472	Metagenome / Metatranscriptome	188	N
F033077	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066371_1000554510	F033077	N/A	MEHTTYKVLRLTTEGYTMVDNINAVKLSKEQCDQVIRNLIADGVNPREIKAVPDTDD*
Ga0066371_100055457	F025518	N/A	MSDKLVHNTKTSLHEESKVYLPTVKEFYPYLDDMLTDRIAKYCAIYSKGTDKASIRQAINDFEEVFDQELTQ*
Ga0066371_100055459	F029472	N/A	MLSRKSIDKLTQKIEDEVANYVTEDPRFTELLNELVPEAIDITLGNIDDRSAINLVSHISSKLRCSPNHSQIHYPRCPL*