NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066371_10000173

Scaffold Ga0066371_10000173


Overview

Basic Information
Taxon OID3300006024 Open in IMG/M
Scaffold IDGa0066371_10000173 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14108
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F007002Metagenome360N
F087292Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0066371_100001733F004144N/AMRNIFKESKYHLEVETGWTYWFHLRHSLVNSYKLIKISFKSLVHGLLPFMWKSDAPKGVIILYHEIMKIQHIQKLDKLRKYPKNERYISNDTE*
Ga0066371_100001734F007002N/AMNDTYLTILNSYGDIVELDYQFDVPSIINELKSIDKWMDGSNNKKGLTLTGSVDDLELAKRNDCSINDNLKKCPSLIDFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGRAYLLNTKKQHGSFAMVDDIYHILMGIYINPHNFKVVTNLLPNCIDHE*
Ga0066371_100001736F087292AGGTGGMNCQHYFKKLDKFAVCAFKADKGFLEIEPFSESCGIYHYVFYGSAKIGKPFQSEFEIVNKGDFFDMKNYLHQPRLYEALEDFYVWGFNTFGEEEWDARLLTNETLKIEEDSVLICLDGKPEVNDKTLRRFDYSELSTEKSYDVKLGDGVIALFTRSK*
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Institute for Fundamental Biomedical Research
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