Scaffold Ga0066375_10104957

Overview

Basic Information

• Taxon OID: 3300006019
• Scaffold ID: Ga0066375_10104957
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 904
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F037260	Metagenome	168	Y
F040145	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066375_101049571	F040145	AGGA	MTKKKWLREKVFVDMYGRPYNLSDVPMTYMKRSEAFAKRRLSKKEISYLYNKDQTTIIIDGC*
Ga0066375_101049572	F037260	N/A	MAKKKKSIPFHEKHNYKQWTSDQGYKFWARDEEDAKLYLERTGAHLGSLKEVDVKNV*
Ga0066375_101049573	F003091	AGGAG	MTMLPRKPITKPGEGKQRQKYLSEERYMEERWDISLGLKGPKRLEGESHEDFQDRRRAENGLLKEYLRGVWVKKKDD*